The purpose of the Annotation, Visualization, and Impact Analysis (AVIA) pipeline is to help scientists rapidly identify variations in their data, map these variations to NCBI genomes, and evaluate their impacts.
FAQs - What are the Acceptable Input Types?
We accept: Single Nucleotide Polymorphisms (SNPs), small Multi-Nucleotide Polymorphisms (MNPs), Insertion\/Deletions (InDels), and Complex Variations using VCF4 files.
We convert everything to bed-like files and store them in our Oracle Database. Some of the databases are coordinate based so for InDels, there may be limited functionality reported.
FAQs - What is a request ID?
The request ID is the unique identifier given to you when you submitted your request. This is either a project/submission identifier that you have specified or automatically generated. This ID allows us to track the progress of your request and to email you when the run has completed or has run into errors. This ID allows allows you to share data with collaborators or other users.
Upload Data
Note: Please click the 'Upload' button next to the 'Select a file' button before clicking the 'Submit' button. You may only upload one file at a time. If you attempt to upload more that one file, only the last file uploaded will be processed. Your upload will be suspended if you attempt too many uploads in a session.
AVIA Info
We are currently refactoring AVIA to enhance available features and improve user experience. At this time, only our variant analysis feature providing extensive annotations is fully operational. We appreciate your patience during this transition period.